blast_blastn
Description¶
Queries a BLAST DNA database
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install blast/blastn
Tools¶
blast¶
BLAST finds regions of similarity between biological sequences.
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | - |
fasta |
file | Input fasta file containing queries sequences | *.{fa,fasta,fa.gz,fasta.gz} |
meta2 |
map | Groovy Map containing db information e.g. [ id:'test2', single_end:false ] | - |
db |
directory | Directory containing the blast database | * |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
txt |
file | - | |
versions |
file | - |
