bmtagger_indexreference
Description¶
Create indexed reference DB for bmtagger
Keywords: reference, index, fasta
Installation¶
ebi-metagenomics/bmtagger/indexreference
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install bmtagger/indexreference
Tools¶
bmtool¶
Tool from bmtagger to create a bitmask file for the reference genome
srprism¶
Tool from bmtagger to create a index for srprism process
makeblastdb¶
Tool from blast to index reference genome
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
reference_fasta |
file | reference fasta file | *.{fa,fasta} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
bitmask |
file | bitmask index file | *.bitmask |
versions |
file | File containing software versions | versions.yml |
srprism |
file | list of srprism indexes | *.srprism.* |
blast_db |
file | indexes for blast | *.n* |