bwamem2_index
Description¶
Create BWA-mem2 index for reference genome
Keywords: index, fasta, genome, reference
Installation¶
ebi-metagenomics/bwamem2/index
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install bwamem2/index
Tools¶
bwamem2¶
BWA-mem2 is a software package for mapping DNA sequences against a large reference genome, such as the human genome.
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | - |
fasta |
file | Input genome fasta file | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | - |
index |
file | BWA genome index files | *.{0123,amb,ann,bwt.2bit.64,pac} |
versions |
file | File containing software versions | versions.yml |
People¶
Authors¶
Maintainers