BWAMEM2_MEM
Description¶
Map reads to reference genome
Pipelines¶
This module is used by the following pipelines:
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install BWAMEM2/MEM
Tools¶
bwa2¶
Mapping DNA sequences against a large reference genome
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | - |
reads |
file | List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. | - |
meta2 |
map | Groovy Map containing reference genome information e.g. [ id:'ref_name' ] | - |
index |
file | A list of BWA index reference files | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
bam |
file | - | |
versions |
file | - |
