catpack_prepare
Description¶
Creates a CAT_pack database based on input FASTAs
Installation¶
ebi-metagenomics/catpack/prepare
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install catpack/prepare
Tools¶
catpack¶
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
db_fasta |
file | A FASTA file containing all sequences to be included in the database | *.{fasta,fa,fna} |
names |
file | An NCBI taxonomy-style names text file | * |
nodes |
file | An NCBI taxonomy-style nodes text file | * |
acc2tax |
file | An NCBI taxonomy names accession to taxonomy file | * |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
db |
file | - | |
taxonomy |
file | - | |
versions |
file | - |
