catpack_prepare

Description

Creates a CAT_pack database based on input FASTAs

Keywords: catpack, cat, prepare, database, profiling, build

Installation

ebi-metagenomics/catpack/prepare

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install catpack/prepare

Tools

catpack

CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

• github.com/MGXlab/CAT_pack
• 10.1186/s13059-019-1817-x
• github.com/MGXlab/CAT_pack
• MIT

Input

Name	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]	-
db_fasta	file	A FASTA file containing all sequences to be included in the database	*.{fasta,fa,fna}
names	file	An NCBI taxonomy-style names text file	*
nodes	file	An NCBI taxonomy-style nodes text file	*
acc2tax	file	An NCBI taxonomy names accession to taxonomy file	*

Output

Name	Type	Description	Pattern
db	file		-
taxonomy	file		-
versions	file		-

People

Authors

• @jfy133

Maintainers

• @jfy133