checkm2_download_db
Description¶
Download DB for checkm2
Keywords: completeness, contamination, database
Installation¶
ebi-metagenomics/checkm2/download_db
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install checkm2/download/db
Tools¶
checkm2¶
CheckM2 - Predicting the quality of metagenome-recovered bins
- 10.1038/s41592-023-01940-w
- github.com/chklovski/CheckM2/tree/main
- [, ', G, P, L, , v, 3, ', ]
Input¶
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
versions |
file | File containing software versions | versions.yml |
checkm2_db |
file | Diamond file with checkm2 database | *.dmnd |