cmsearchtbloutdeoverlap
Description¶
Perl script to remove lower scoring overlaps from cmsearch --tblout files.
Pipelines¶
This module is used by the following pipelines:
Installation¶
ebi-metagenomics/cmsearchtbloutdeoverlap
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install cmsearchtbloutdeoverlap
Tools¶
cmsearchtbloutdeoverlap¶
cmsearch-deoverlap.pl: remove lower scoring overlaps from cmsearch
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
- |
cmsearch_tblout |
file | Tabular file from cmsearch | *.{tblout, tblout.gz} |
clanin |
file | Text file containing the Rfam clans to deoverlap on | *.claninfo |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
- |
versions |
file | File containing software versions | versions.yml |
cmsearch_tblout_deoverlapped |
file | Deoverlapped .tblout file | *.tblout.deoverlapped |
