colabfold_colabfoldbatch
Description¶
Perform protein folding predictions with ColabFold (current version queries the ColabFold server -with its limitations)
Keywords: protein, prediction, folding, structure
Installation¶
ebi-metagenomics/colabfold/colabfoldbatch
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install colabfold/colabfoldbatch
Tools¶
colabfold¶
ColabFold: making protein folding accessible to all
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
fasta |
file | Amino acid file or MSA file | *.{fa,fasta,a3m} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
out_dir |
directory | Output directory containing output prediction files | * |
versions |
file | File containing software versions | versions.yml |
People¶
Authors¶
Maintainers