crisprcasfinder
Description¶
crisprcasfinder
Installation¶
ebi-metagenomics/crisprcasfinder
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install crisprcasfinder
Tools¶
crisprcasfinder¶
CRISPRCasFinder is an updated, improved, and integrated version of CRISPRFinder and CasFinder.
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
fasta |
file | fasta file | *.{fa,fasta} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
gff |
file | annotations file | *.gff |
tsv |
directory | tab separated values | - |
fna |
file | rawCRISPRs fna file | *.fna |
versions |
file | File containing software versions | versions.yml |
