diamond_makedb
Description¶
Builds a DIAMOND database
Installation¶
ebi-metagenomics/diamond/makedb
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install diamond/makedb
Tools¶
diamond¶
Accelerated BLAST compatible local sequence aligner
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | - |
fasta |
file | Input fasta file | *.{fa,fasta,fa.gz,fasta.gz} |
taxonmap |
file | Optional mapping file of NCBI protein accession numbers to taxon ids (gzip compressed), required for taxonomy functionality. | *.gz |
taxonnodes |
file | Optional NCBI taxonomy nodes.dmp file, required for taxonomy functionality. | *.dmp |
taxonnames |
file | Optional NCBI taxonomy names.dmp file, required for taxonomy functionality. | *.dmp |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
db |
file | - | |
versions |
file | - |
