eggnogmapper

Description

Fast genome-wide functional annotation through orthology assignment.

Installation

ebi-metagenomics/eggnogmapper

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install eggnogmapper

Tools

eggnogmapper

Fast genome-wide functional annotation through orthology assignment.

• github.com/eggnogdb/eggnog-mapper/wiki
• 10.1093/molbev/msab293
• github.com/eggnogdb/eggnog-mapper
• AGPL v3

Input

Name	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	-
fasta	file	Database of sequences in FASTA format	*.{fasta,fa,fasta.gz,fa.gz}
annotation_hit_table	file	Hits file from previous EggNOG run with Diamond	*.hits
eggnog_db	file	The eggnog database file	*.db
eggnog_data_dir	directory	Directory containing eggnog database files	*
eggnog_diamond_db	file	The eggnog Diamond protein database file	*.dmnd

Output

Name	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	-
hits	file	Tabulated file containing hits	*.hits
annotations	file	Tabulated file containing annotations	*.annotations
orthologs	file	Tabulated file containing EggNOG orthologs	*.seed_orthologs
versions	file	File containing software versions	versions.yml

People

Authors

@vagkaratzas @chrisata