eggnogmapper

Description¶

Fast genome-wide functional annotation through orthology assignment.

Keywords: annotation, orthology, genomics

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install eggnogmapper

Fast genome-wide functional annotation through orthology assignment.

Name	Type	Description	Pattern
`meta`	map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`	-
`fasta`	file	Database of sequences in FASTA format	`*.{fasta,fa,fasta.gz,fa.gz}`
`annotation_hit_table`	file	Hits file from previous EggNOG run with Diamond	`*.hits`
`eggnog_db`	file	The eggnog database file	`*.db`
`eggnog_data_dir`	directory	Directory containing eggnog database files	`*`
`eggnog_diamond_db`	file	The eggnog Diamond protein database file	`*.dmnd`

Name	Type	Description	Pattern
`meta`	map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`	-
`hits`	file	Tabulated file containing hits	`*.hits`
`annotations`	file	Tabulated file containing annotations	`*.annotations`
`orthologs`	file	Tabulated file containing EggNOG orthologs	`*.seed_orthologs`
`versions`	file	File containing software versions	`versions.yml`