fastqsuffixheadercheck
Description¶
Sanity check for FASTQ suffixes and headers
Keywords: fastq, qc, reads
Installation¶
ebi-metagenomics/fastqsuffixheadercheck
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install fastqsuffixheadercheck
Tools¶
fastqsuffixheadercheck¶
Sanity check for FASTQ suffixes and headers, uses mgnify-pipelines-toolkit as conda environment
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
fastq |
file | Either a single-end FASTQ file, or two paired-end FASTQ files | *.{fastq,fastq.gz} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
json |
file | JSON log file that is empty if no errors were found, or that contains which reads had mismatches if there were errors | *.json |
versions |
file | File containing software versions | versions.yml |
People¶
Authors¶
Maintainers