fraggenescanrs
Description¶
FragGeneScanRs: faster gene prediction for short reads
Pipelines¶
This module is used by the following pipelines:
Installation¶
ebi-metagenomics/fraggenescanrs
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install fraggenescanrs
Tools¶
fraggenescanrs¶
Rust implementation of the gene prediction model for short and error-prone reads
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
- |
fasta |
file | Database of sequences in FASTA format | *.{fasta,fna,fasta.gz,fna.gz} |
training_file_name |
string | The name of the file that contains the model parameters. These models are part of the tool's installation, so the name is the only information needed. | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
nucleotide_fasta |
file | - | |
amino_acid_fasta |
file | - | |
gene_annotations |
file | - | |
gff |
file | - | |
versions |
file | - |
