fraggenescanrs

Description¶

FragGeneScanRs: faster gene prediction for short reads

Keywords: gene, gene finding, microbial

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install fraggenescanrs

Rust implementation of the gene prediction model for short and error-prone reads

Name	Type	Description	Pattern
`meta`	map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`	-
`fasta`	file	Database of sequences in FASTA format	`*.{fasta,fna,fasta.gz,fna.gz}`
`training_file_name`	string	The name of the file that contains the model parameters. These models are part of the tool's installation, so the name is the only information needed.	-

Name	Type	Pattern
`nucleotide_fasta`	file	-
`amino_acid_fasta`	file	-
`gene_annotations`	file	-
`gff`	file	-
`versions`	file	-

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