generategaf
Description¶
Script that generates a GO Annotation File (GAF) out of an InterProScan result tsv file.
Pipelines¶
This module is used by the following pipelines:
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install generategaf
Tools¶
generategaf¶
Generate GAF file from interproscan output, uses mgnify-pipelines-toolkit as conda environment
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
ips |
file | InterProScan output tsv file. | *.tsv |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
gaf |
file | - | |
versions |
file | - |
