hhsuite_buildhhdb
Description¶
create an HH database to use for hhblits searches
Installation¶
ebi-metagenomics/hhsuite/buildhhdb
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install hhsuite/buildhhdb
Tools¶
hhsuite¶
HH-suite3 for fast remote homology detection and deep protein annotation
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
a3m |
directory | Directory containing a3m format MSAs | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
versions |
file | File containing software versions | versions.yml |
hh_db |
directory | HH db directory containing all precomputed required data and index files (HMMs and context states for prefiltering) | - |
