interproscan
Description¶
Produces protein annotations and predictions from a FASTA file
Pipelines¶
This module is used by the following pipelines:
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install interproscan
Tools¶
interproscan¶
InterPro integrates together predictive information about proteins function from a number of partner resources
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
- |
fasta |
file | Input fasta file containing query sequences | *.{fa,fasta} |
interproscan_db |
directory | Directory containing interproscan database | - |
db_version |
string | Version of the interproscan database for the versions.yml | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
tsv |
file | - | |
xml |
file | - | |
gff3 |
file | - | |
json |
file | - | |
versions |
file | - |
