krona_ktimporttext

Description¶

Creates a Krona chart from text files listing quantities and lineages.

Keywords: plot, taxonomy, interactive, html, visualisation, krona chart, metagenomics

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install krona/ktimporttext

Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.

Name	Type	Description	Pattern
`meta`	map	Groovy Map containing sample information e.g. [ id:'test']	-
`report`	file	Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with '#' will be ignored.	`*.{txt}`

Name	Type	Description	Pattern
`meta`	map	Groovy Map containing sample information e.g. [ id:'test' ]	-
`versions`	file	File containing software versions	`versions.yml`
`html`	file	A html file containing an interactive krona plot.	`*.{html}`

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