librarystrategycheck
Description¶
Uses base-conservation vectors to assess whether a run is AMPLICON or not
Pipelines¶
This module is used by the following pipelines:
Installation¶
ebi-metagenomics/librarystrategycheck
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install librarystrategycheck
Tools¶
librarystrategycheck¶
Uses base-conservation vectors to assess whether a run is AMPLICON or not, uses mgnify-pipelines-toolkit as conda environment
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
bcv |
file | Merged or single-end FASTQ file | *.fastq.gz |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
library_check_out |
file | - | |
versions |
file | - |
