bgcsmapper
Description¶
Integrates BGC predictions from (optional) GECCO / antiSMASH / SanntiS outputs into a single GFF3 file
Installation¶
ebi-metagenomics/mgnifypipelinestoolkit/bgcsmapper
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install bgcsmapper
Tools¶
bgcsmapper¶
Integrates BGC predictions from (optional) GECCO / antiSMASH / SanntiS outputs into a single GFF3 file, uses mgnify-pipelines-toolkit as conda environment
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1' ] |
- |
gff |
file | GFF associated to the gbc prediction tools input files | *.{gff,gff.gz} |
sanntis |
file | Optional GFF output generated by Sanntis tool | *.{gff,gff.gz} |
gecco |
file | Optional GFF output generated by Gecco tool | *.{gff,gff.gz} |
antismash |
file | Optional GFF output generated by AntiSMASH tool | *.{gff,gff.gz} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
gff |
file | - | |
json |
file | - | |
versions_mgnifypipelinestoolkit |
file | - |
