gff2gbk
Description¶
Transform GFF3 + contigs + proteins (optional) into GBK format
Installation¶
ebi-metagenomics/mgnifypipelinestoolkit/gff2gbk
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install gff2gbk
Tools¶
gff2gbk¶
Transform GFF3 + contigs + proteins (optional) into GBK format
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1' ] |
- |
contigs |
file | FASTA file containing contigs/scaffolds/chromosomes | *.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz} |
gff |
file | GFF file containing genes annotation | *.{gff,gff.gz} |
proteins |
file | Optional FASTA file containing the CDSs translation into protein sequences | *.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
gbk |
file | - | |
versions_mgnifypipelinestoolkit |
file | - |
