mgnifypipelinestoolkit_kronatxtfromcatclassification
Description¶
Use diamond output file to create a table with Rhea and CHEBI reaction annotation for every protein
Pipelines¶
This module is used by the following pipelines:
Installation¶
ebi-metagenomics/mgnifypipelinestoolkit/kronatxtfromcatclassification
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install mgnifypipelinestoolkit/kronatxtfromcatclassification
Tools¶
mgnifypipelinestoolkit¶
Collection of scripts and tools for MGnify pipelines
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Meta map | - |
cat_output |
file | TSV file from CAT_pack contigs | - |
meta2 |
map | Meta map | - |
taxonomy |
directory | Folder with the NCBI taxonomy nodes.dmp and nodes.dmp | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
krona_txt |
file | - | |
versions |
file | - |
