owltools
Description¶
OWLTools is convenience java API on top of the OWL API, used here for mapping GO terms to GO-slims
Pipelines¶
This module is used by the following pipelines:
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install owltools
Tools¶
owltools¶
OWLTools is convenience java API on top of the OWL API, used here for mapping GO terms to GO-slims
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
input_gaf |
file | Input GO Annotation (GAF) file. Format is described here https://geneontology.org/docs/go-annotation-file-gaf-format-2.1/ | *.gaf |
go_obo |
file | Gene ontology .OBO file, for example go-basic. Can usually be downloaded here https://geneontology.org/docs/download-ontology/ | *.go |
goslim_ids |
file | txt file containing the GO terms that make up the input GO-slim | *.txt |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
gaf |
file | - | |
versions |
file | - |
