pathofact2_downloaddata
Description¶
Database downloader from zenodo. Returns the pathofact models database
Installation¶
ebi-metagenomics/pathofact2/downloaddata
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install pathofact2/downloaddata
Tools¶
pathofact2¶
PathoFact 2.0, an enhanced pipeline for improved ARG, VF, and toxin prediction in prokaryotic protein sequences
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
db_zenodo_id |
string | Zenodo record ID to download | ^[0-9]+$ |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
zenodo_file |
file | - | |
versions_python |
file | - |
