pimento_generatebcv
Description¶
Generate Base-Conservation Vectors (BCV) in a stepwise and windowed manner for a fastq file.
Keywords: primers, sequencing, genomics, metagenomics
Installation¶
ebi-metagenomics/pimento/generatebcv
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install pimento/generatebcv
Tools¶
pimento¶
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
fwd_flag |
string | String that controls whether the forward strand of a merged fastq file | should have its MCP proportions assessed. If it should, | string value should be "auto" | {auto,none} |
rev_flag |
string | String that controls whether the reverse strand of a merged fastq file | should have its MCP proportions assessed. If it should, | string value should be "auto" | {auto,none} |
fastq |
file | Merged or single-end FASTQ file | *.fastq.gz |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
tsv |
file | - | |
versions |
file | - |
People¶
Authors¶
Maintainers