prodigal
Description¶
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install prodigal
Tools¶
prodigal¶
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | - |
genome |
file | fasta/fasta.gz file | - |
output_format |
string | Output format ("gbk"/"gff"/"sqn"/"sco") | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
gene_annotations |
file | - | |
nucleotide_fasta |
file | - | |
amino_acid_fasta |
file | - | |
all_gene_annotations |
file | - | |
versions |
file | - |
