proovframe_fix
Description¶
frame-shift correction for long read (meta)genomics - fix frameshifts in reads
Keywords: frame-shift correction, long-read sequencing, sequence analysis
Installation¶
ebi-metagenomics/proovframe/fix
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install proovframe/fix
Tools¶
proovframe¶
frame-shift correction for long read (meta)genomics
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
fa |
file | A FASTA file containing a database of guide protein sequences | *.{faa,fasta,fa} |
meta2 |
map | Groovy Map containing reference information e.g. [ id:'test' ] | - |
tsv |
file | Output TSV file with the frameshift-aware protein to read alignments from proovframe/map | *.{tsv} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
out_fa |
file | - | |
versions |
file | - |
People¶
Authors¶
Maintainers