proovframe_map
Description¶
frame-shift correction for long read (meta)genomics - maps proteins to reads
Installation¶
ebi-metagenomics/proovframe/map
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install proovframe/map
Tools¶
proovframe¶
frame-shift correction for long read (meta)genomics
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
faa |
file | A FASTA file containing a database of guide protein sequences | *.{faa,fasta,fa} |
fasta |
file | A FASTA file containing raw read nucleotide sequences | *.{fasta,fa} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
tsv |
file | - | |
versions |
file | - |
People¶
Authors¶
@manuelcarbajo
@MGS-sails
@vagkaratzas