pyrodigal

Description¶

Pyrodigal is a Python module that provides bindings to Prodigal, a fast, reliable protein-coding gene prediction for prokaryotic genomes.

Keywords: sort, annotation, prediction, prokaryote

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install pyrodigal

Pyrodigal is a Python module that provides bindings to Prodigal (ORF finder for microbial sequences) using Cython.

Name	Type	Description	Pattern
`meta`	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	-
`fasta`	file	FASTA file	`*.{fasta.gz,fa.gz,fna.gz}`
`output_format`	string	Output format	`{gbk,gff}`

Name	Type	Pattern
`annotations`	file	-
`fna`	file	-
`faa`	file	-
`score`	file	-
`versions`	file	-

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