sanntis
Description¶
Runs SanntiS to identify biosynthetic gene clusters.
Pipelines¶
This module is used by the following pipelines:
Installation¶
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install sanntis
Tools¶
sanntis¶
SMBGC Annotation using Neural Networks Trained on Interpro Signatures
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing genome information - genome accession or ID to use. | - |
interproscan |
file | The InteproScan TSV or GFF output | *.{tsv.gz,tsv,gff,gff.gz,gff3,gff3.gz} |
gbk |
file | A file in .gbk format specifying the coding sequences. | *.{gbk,gbk.gz} |
faa |
file | The prodigal of combined gene caller proteins in fasta format | *.{fasta,fasta.gz,faa,faa.gz} |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
gff |
file | - | |
versions |
file | - |
