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seqfu_check

Description

Evaluates the integrity of DNA FASTQ files

Keywords: fastq, reads, qc

Installation

ebi-metagenomics/seqfu/check

nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install seqfu/check

Tools

seqfu

DNA sequence utilities for FASTX files

Input

Name Type Description Pattern
meta map Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] -
fastq file Either a single-end FASTQ file, or two paired-end FASTQ files *.{fastq,fastq.gz,fq,fq.gz}

Output

Name Type Description Pattern
meta map Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] -
tsv file TSV file containing output from seqfu/check, first column is either OK or ERR depending on if anything is wrong with the file(s) *.tsv
versions file File containing software versions versions.yml

People

Authors

Maintainers