taxonkit_reformat
Description¶
Reformat lineage in canonical ranks
Installation¶
ebi-metagenomics/taxonkit/reformat
nf-core modules -g https://www.github.com/ebi-metagenomics/nf-modules install taxonkit/reformat
Tools¶
taxonkit¶
A Cross-platform and Efficient NCBI Taxonomy Toolkit
Input¶
| Name | Type | Description | Pattern |
|---|---|---|---|
meta |
map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
- |
tsv |
file | Input TSV file | *.{tsv,tsv.gz} |
taxdb |
file | Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz | - |
Output¶
| Name | Type | Description | Pattern |
|---|---|---|---|
reformat_tsv |
file | - | |
versions |
file | - |
